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SRX25690459: Trichomycterus rosablanca PacBio HiFi sequencing
1 PACBIO_SMRT (Sequel II) run: 2.6M spots, 23.4G bases, 11.3Gb downloads

Design: SAGE blue pippin
Submitted by: G10K
Study: Trichomycterus rosablanca (Rosablanca cavefish) genome, fTriRos1, sequence data
show Abstracthide Abstract
Trichomycterus rosablanca is a new troglobitic catfish species from caves in southeastern Santander, Colombia. These caves are drained by the Carare River of the Magdalena River basin. The new species is characterized by the advanced condition in the typical troglomorphisms found in other congeneric cave-dwelling species, such as absence of eyes and pigmentation (written by Carlos DoNascimiento 2018, Biota Colombiana). This genome is from a male found in Andes caves in Santander, Colombia, collected by Mauricio Torres and coordinated by Daniel Cadena to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP) and a Colombia Genomes Project. Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
Sample: Animal sample from Trichomycterus rosablanca (Rosablanca cavefish) for VGP genome, fTriRos1
SAMN32755940 • SRS19335847 • All experiments • All runs
Library:
Name: fTriRos1_PacBio_HiFi_fastq_1
Instrument: Sequel II
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 2.6M spots, 23.4G bases, 11.3Gb
Run# of Spots# of BasesSizePublished
SRR302284222,612,79523.4G11.3Gb2024-08-14

ID:
34719106

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